23 Colophon
The 2022 and 2024 editions of this book were produce in RStudio and with the bookdown package. Below a listing of installed programs and libraries, the operating system, and their specific versions.
## ─ Session info ───────────────────────────────────────────────────────────────
## setting value
## version R version 4.3.3 (2024-02-29)
## os macOS Sonoma 14.5
## system x86_64, darwin20
## ui X11
## language (EN)
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz America/New_York
## date 2024-04-10
## pandoc 3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## abind 1.4-5 2016-07-21 [2] CRAN (R 4.3.0)
## annotate * 1.80.0 2023-10-24 [2] Bioconductor
## AnnotationDbi * 1.64.1 2023-11-03 [2] Bioconductor
## askpass 1.2.0 2023-09-03 [2] CRAN (R 4.3.0)
## backports 1.4.1 2021-12-13 [2] CRAN (R 4.3.0)
## Biobase * 2.62.0 2023-10-24 [2] Bioconductor
## BiocGenerics * 0.48.1 2023-11-01 [2] Bioconductor
## Biostrings 2.70.3 2024-03-13 [2] Bioconductor 3.18 (R 4.3.3)
## bit 4.0.5 2022-11-15 [2] CRAN (R 4.3.0)
## bit64 4.0.5 2020-08-30 [2] CRAN (R 4.3.0)
## bitops 1.0-7 2021-04-24 [2] CRAN (R 4.3.0)
## blob 1.2.4 2023-03-17 [2] CRAN (R 4.3.0)
## bookdown * 0.38.1 2024-03-26 [2] Github (rstudio/bookdown@50a1c1e)
## broom 1.0.5 2023-06-09 [2] CRAN (R 4.3.0)
## bslib 0.6.2 2024-03-22 [2] CRAN (R 4.3.2)
## cachem 1.0.8 2023-05-01 [2] CRAN (R 4.3.0)
## calibrate 1.7.7 2020-06-19 [2] CRAN (R 4.3.0)
## car 3.1-2 2023-03-30 [2] CRAN (R 4.3.0)
## carData 3.0-5 2022-01-06 [2] CRAN (R 4.3.0)
## chromote 0.2.0 2024-02-12 [1] CRAN (R 4.3.2)
## cli 3.6.2 2023-12-11 [2] CRAN (R 4.3.0)
## CMplot * 4.5.1 2024-01-19 [2] CRAN (R 4.3.0)
## colorspace 2.1-0 2023-01-23 [2] CRAN (R 4.3.0)
## crayon 1.5.2 2022-09-29 [2] CRAN (R 4.3.0)
## crul 1.4.0 2023-05-17 [2] CRAN (R 4.3.0)
## curl 5.2.1 2024-03-01 [2] CRAN (R 4.3.2)
## data.table * 1.15.4 2024-03-30 [1] CRAN (R 4.3.2)
## DBI 1.2.2 2024-02-16 [2] CRAN (R 4.3.2)
## devtools * 2.4.5 2022-10-11 [2] CRAN (R 4.3.0)
## digest 0.6.35 2024-03-11 [2] CRAN (R 4.3.2)
## dplyr * 1.1.4 2023-11-17 [2] CRAN (R 4.3.0)
## DT * 0.33 2024-04-04 [1] CRAN (R 4.3.2)
## ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.3.0)
## evaluate 0.23 2023-11-01 [2] CRAN (R 4.3.0)
## fansi 1.0.6 2023-12-08 [2] CRAN (R 4.3.0)
## fastmap 1.1.1 2023-02-24 [2] CRAN (R 4.3.0)
## flextable * 0.9.5 2024-03-06 [1] CRAN (R 4.3.2)
## fontBitstreamVera 0.1.1 2017-02-01 [2] CRAN (R 4.3.0)
## fontLiberation 0.1.0 2016-10-15 [2] CRAN (R 4.3.0)
## fontquiver 0.2.1 2017-02-01 [2] CRAN (R 4.3.0)
## forcats * 1.0.0 2023-01-29 [2] CRAN (R 4.3.0)
## foreign 0.8-86 2023-11-28 [2] CRAN (R 4.3.3)
## formatR * 1.14 2023-01-17 [2] CRAN (R 4.3.0)
## fs 1.6.3 2023-07-20 [2] CRAN (R 4.3.0)
## gdtools 0.3.7 2024-03-05 [2] CRAN (R 4.3.2)
## geneplotter * 1.80.0 2023-10-24 [2] Bioconductor
## generics 0.1.3 2022-07-05 [2] CRAN (R 4.3.0)
## GenomeInfoDb 1.38.8 2024-03-15 [2] Bioconductor 3.18 (R 4.3.3)
## GenomeInfoDbData 1.2.11 2024-03-26 [2] Bioconductor
## gfonts 0.2.0 2023-01-08 [2] CRAN (R 4.3.0)
## ggplot2 * 3.5.0 2024-02-23 [2] CRAN (R 4.3.2)
## ggpubr * 0.6.0.999 2024-03-26 [2] Github (kassambara/ggpubr@6aeb4f7)
## ggsci * 3.0.3 2024-03-25 [2] CRAN (R 4.3.2)
## ggsignif 0.6.4 2022-10-13 [2] CRAN (R 4.3.0)
## ggthemes * 5.1.0 2024-02-10 [2] CRAN (R 4.3.2)
## glue 1.7.0 2024-01-09 [2] CRAN (R 4.3.0)
## gtable 0.3.4 2023-08-21 [2] CRAN (R 4.3.0)
## hms 1.1.3 2023-03-21 [2] CRAN (R 4.3.0)
## htmltools 0.5.8 2024-03-25 [2] CRAN (R 4.3.2)
## htmlwidgets 1.6.4 2023-12-06 [2] CRAN (R 4.3.0)
## httpcode 0.3.0 2020-04-10 [2] CRAN (R 4.3.0)
## httpuv 1.6.15 2024-03-26 [2] CRAN (R 4.3.2)
## httr 1.4.7 2023-08-15 [2] CRAN (R 4.3.0)
## ieugwasr * 0.2.2-9000 2024-04-05 [1] Github (MRCIEU/ieugwasr@52e03a7)
## IRanges * 2.36.0 2023-10-24 [2] Bioconductor
## jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.3.0)
## jsonlite 1.8.8 2023-12-04 [2] CRAN (R 4.3.0)
## kableExtra * 1.4.0 2024-01-24 [1] CRAN (R 4.3.2)
## KEGGREST 1.42.0 2023-10-24 [2] Bioconductor
## knitr * 1.45 2023-10-30 [1] CRAN (R 4.3.0)
## later 1.3.2 2023-12-06 [2] CRAN (R 4.3.0)
## lattice * 0.22-6 2024-03-20 [2] CRAN (R 4.3.2)
## lazyeval 0.2.2 2019-03-15 [2] CRAN (R 4.3.0)
## lifecycle 1.0.4 2023-11-07 [2] CRAN (R 4.3.0)
## lubridate * 1.9.3 2023-09-27 [2] CRAN (R 4.3.0)
## magrittr 2.0.3 2022-03-30 [2] CRAN (R 4.3.0)
## MASS 7.3-60.0.1 2024-01-13 [2] CRAN (R 4.3.3)
## Matrix 1.6-5 2024-01-11 [2] CRAN (R 4.3.3)
## memoise 2.0.1 2021-11-26 [2] CRAN (R 4.3.0)
## mime 0.12 2021-09-28 [2] CRAN (R 4.3.0)
## miniUI 0.1.1.1 2018-05-18 [2] CRAN (R 4.3.0)
## mitools 2.4 2019-04-26 [1] CRAN (R 4.3.0)
## MRInstruments * 0.3.2 2024-03-27 [1] Github (MRCIEU/MRInstruments@efa2ca0)
## munsell 0.5.1 2024-04-01 [1] CRAN (R 4.3.2)
## officer 0.6.5 2024-02-24 [2] CRAN (R 4.3.2)
## openssl 2.1.1 2023-09-25 [2] CRAN (R 4.3.0)
## openxlsx * 4.2.5.2 2023-02-06 [2] CRAN (R 4.3.0)
## pillar 1.9.0 2023-03-22 [2] CRAN (R 4.3.0)
## pkgbuild 1.4.4 2024-03-17 [2] CRAN (R 4.3.2)
## pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.3.0)
## pkgload 1.3.4 2024-01-16 [2] CRAN (R 4.3.0)
## plotly * 4.10.4 2024-01-13 [2] CRAN (R 4.3.0)
## png 0.1-8 2022-11-29 [2] CRAN (R 4.3.0)
## processx 3.8.4 2024-03-16 [2] CRAN (R 4.3.2)
## profvis 0.3.8 2023-05-02 [2] CRAN (R 4.3.0)
## promises 1.2.1 2023-08-10 [2] CRAN (R 4.3.0)
## ps 1.7.6 2024-01-18 [2] CRAN (R 4.3.0)
## purrr * 1.0.2 2023-08-10 [2] CRAN (R 4.3.0)
## qqman * 0.1.9 2023-08-23 [2] CRAN (R 4.3.0)
## R6 2.5.1 2021-08-19 [2] CRAN (R 4.3.0)
## RACER * 1.0.0 2024-03-26 [2] Github (oliviasabik/RACER@1394c9d)
## ragg 1.3.0 2024-03-13 [2] CRAN (R 4.3.2)
## RColorBrewer 1.1-3 2022-04-03 [2] CRAN (R 4.3.0)
## Rcpp 1.0.12 2024-01-09 [2] CRAN (R 4.3.0)
## RCurl 1.98-1.14 2024-01-09 [2] CRAN (R 4.3.0)
## readr * 2.1.5 2024-01-10 [2] CRAN (R 4.3.0)
## remotes * 2.5.0 2024-03-17 [2] CRAN (R 4.3.2)
## rlang 1.1.3 2024-01-10 [2] CRAN (R 4.3.0)
## rmarkdown * 2.26.1 2024-03-26 [2] Github (rstudio/rmarkdown@ee69d59)
## RNHANES * 1.1.1 2024-03-27 [1] Github (silentspringinstitute/RNHANES@860fc94)
## RSQLite 2.3.5 2024-01-21 [2] CRAN (R 4.3.0)
## rstatix 0.7.2 2023-02-01 [2] CRAN (R 4.3.0)
## rstudioapi 0.16.0 2024-03-24 [2] CRAN (R 4.3.2)
## rvest 1.0.4 2024-02-12 [2] CRAN (R 4.3.2)
## S4Vectors * 0.40.2 2023-11-23 [2] Bioconductor
## sass 0.4.9 2024-03-15 [2] CRAN (R 4.3.2)
## scales 1.3.0 2023-11-28 [2] CRAN (R 4.3.0)
## sessioninfo 1.2.2 2021-12-06 [2] CRAN (R 4.3.0)
## shiny 1.8.1 2024-03-26 [2] CRAN (R 4.3.2)
## stringi 1.8.3 2023-12-11 [2] CRAN (R 4.3.0)
## stringr * 1.5.1 2023-11-14 [2] CRAN (R 4.3.0)
## survey 4.4-2 2024-03-20 [1] CRAN (R 4.3.2)
## survival 3.5-8 2024-02-14 [2] CRAN (R 4.3.3)
## svglite 2.1.3 2023-12-08 [1] CRAN (R 4.3.0)
## systemfonts 1.0.6 2024-03-07 [2] CRAN (R 4.3.2)
## textshaping 0.3.7 2023-10-09 [2] CRAN (R 4.3.0)
## tibble * 3.2.1 2023-03-20 [2] CRAN (R 4.3.0)
## tidyr * 1.3.1 2024-01-24 [2] CRAN (R 4.3.2)
## tidyselect 1.2.1 2024-03-11 [2] CRAN (R 4.3.2)
## tidyverse * 2.0.0 2023-02-22 [2] CRAN (R 4.3.0)
## timechange 0.3.0 2024-01-18 [2] CRAN (R 4.3.0)
## tinytex * 0.50 2024-03-16 [2] CRAN (R 4.3.2)
## TwoSampleMR * 0.5.11 2024-03-26 [2] Github (MRCIEU/TwoSampleMR@ebfeb95)
## tzdb 0.4.0 2023-05-12 [2] CRAN (R 4.3.0)
## urlchecker 1.0.1 2021-11-30 [2] CRAN (R 4.3.0)
## usethis * 2.2.3 2024-02-19 [2] CRAN (R 4.3.2)
## utf8 1.2.4 2023-10-22 [2] CRAN (R 4.3.0)
## uuid 1.2-0 2024-01-14 [2] CRAN (R 4.3.0)
## vctrs 0.6.5 2023-12-01 [2] CRAN (R 4.3.0)
## viridisLite 0.4.2 2023-05-02 [2] CRAN (R 4.3.0)
## webshot * 0.5.5 2023-06-26 [1] CRAN (R 4.3.0)
## webshot2 * 0.1.1 2023-08-11 [1] CRAN (R 4.3.0)
## websocket 1.4.1 2021-08-18 [1] CRAN (R 4.3.0)
## withr 3.0.0 2024-01-16 [2] CRAN (R 4.3.0)
## xfun 0.43 2024-03-25 [2] CRAN (R 4.3.2)
## XML * 3.99-0.16.1 2024-01-22 [2] CRAN (R 4.3.2)
## xml2 * 1.3.6 2023-12-04 [2] CRAN (R 4.3.0)
## xtable 1.8-4 2019-04-21 [2] CRAN (R 4.3.0)
## XVector 0.42.0 2023-10-24 [2] Bioconductor
## yaml 2.3.8 2023-12-11 [2] CRAN (R 4.3.0)
## zip 2.3.1 2024-01-27 [2] CRAN (R 4.3.2)
## zlibbioc 1.48.2 2024-03-13 [2] Bioconductor 3.18 (R 4.3.3)
##
## [1] /Users/slaan3/Library/R/x86_64/4.3/library
## [2] /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library
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